Package: oglcnac 0.1.6
oglcnac: Processing and Analysis of 'O-GlcNAcAtlas' Data
Provides tools for processing and analyzing data from the 'O-GlcNAcAtlas' database <https://oglcnac.org/>, as described in Ma (2021) <doi:10.1093/glycob/cwab003>. It integrates 'UniProt' <https://www.uniprot.org/> API calls to retrieve additional information. It is specifically designed for research workflows involving 'O-GlcNAcAtlas' data, providing a flexible and user-friendly interface for customizing and downloading processed results. Interactive elements allow users to easily adjust parameters and handle various biological datasets.
Authors:
oglcnac_0.1.6.tar.gz
oglcnac_0.1.6.zip(r-4.7)oglcnac_0.1.6.zip(r-4.6)oglcnac_0.1.6.zip(r-4.5)
oglcnac_0.1.6.tgz(r-4.6-any)oglcnac_0.1.6.tgz(r-4.5-any)
oglcnac_0.1.6.tar.gz(r-4.7-any)oglcnac_0.1.6.tar.gz(r-4.6-any)
oglcnac_0.1.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
oglcnac/json (API)
| # Install 'oglcnac' in R: |
| install.packages('oglcnac', repos = c('https://yaoxiangli.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/yaoxiangli/oglcnac/issues
Pkgdown/docs site:https://yaoxiangli.github.io
Last updated from:2082a9b1d7. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 130 | ||
| source / vignettes | OK | 186 | ||
| linux-release-x86_64 | OK | 130 | ||
| macos-release-arm64 | OK | 104 | ||
| macos-oldrel-arm64 | OK | 118 | ||
| windows-devel | OK | 87 | ||
| windows-release | OK | 72 | ||
| windows-oldrel | OK | 74 | ||
| wasm-release | OK | 130 |
Exports:compare_atlas_tablescompare_tibbles_uniprotexport_atlas_csvlaunch_appparse_uniprot_dataprepare_atlas_dataprocess_tibble_uniprotprocess_tibble_uniprot_cachedretrieve_uniprot_datavalidate_atlas_data
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compare Two Atlas Tables | compare_atlas_tables |
| Compare Input and Updated Tibbles | compare_tibbles_uniprot |
| Export O-GlcNAcAtlas Data as CSV | export_atlas_csv |
| Launch oglcnac Shiny App | launch_app |
| Parse UniProt Data | parse_uniprot_data |
| Prepare O-GlcNAcAtlas Data for Export | prepare_atlas_data |
| Process a Tibble of UniProt Data | process_tibble_uniprot |
| Process UniProt Data with a Local Cache | process_tibble_uniprot_cached |
| Retrieve Data from UniProt API | retrieve_uniprot_data |
| Validate O-GlcNAcAtlas Data | validate_atlas_data |
